This is a mirror of the Bibutils web site by Chris Putnam. Please see the original site for the most recent updates. | |
Bibutils v3 | |
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3.40 2/10/08 MODSIN + Fix crash where placeTerm tag doesn't have attribute (Thanks to Martin-Michael Schoenbeck for identifying the problem and submitting an initial patch). + Properly handle the 'mods:' namespace (Thanks to Martin-Michael Schoenbeck for identifying the problem and submitting an initial patch). + Fix bug where multiple roleTerms confused role assignment. RIS2XML + Oxford journal RIS output is now putting DOI information in the N1 field; recognize this (Thanks to Richard Mathar for letting me know). XML2ADS + New converter for the ADS format submitted by Richard Mathar. XML2BIB + Bias the program to output issue/number tags as 'number' first and use 'issue' only in cases where both issue and number have been defined. + Add '-sk' '--strictkey' option that only outputs alphanumeric characters in the bibtex reference names (this is overly strict, but may be useful in some cases to automatically avoid problems with other bibtex parsers) XML2END + Fix missing return for articles with article numbers rather than page numbers XML2WORDBIB + Rename "xml2word" to avoid confusion with other programs that work on Word documents, not Word bibliographies 3.39 10/24/07 NAME MANGLING + Fix crash caused by specifically malformed name field 3.38 10/10/07 BIB2XML + Fix crash when bibtex citation key is blank (introduced in 3.37) END2XML + Fix handling of total pages + Fix handling of conference name ENDX2XML + Fix handling of total pages + Fix handling of conference name + Fix bug where reference would skip if the starting record tag was split by the input buffer 3.37 8/20/07 MODSOUT + fix bug where terminating > symbol is missing in <identifier type="serialnumber"> output 3.36 8/19/07 CHARSET CONVERSION + add recognition of apostrophe HTML entity LIBRARY HANDLING + resolve duplicates of citation keys by adding a-z BIB2XML + properly handle bibtex files output by endnote that don't have field keys + add support for Diploma, Doctoral, and Habilitation theses (German) ENDX2XML + properly handle whitespace in style tags + add support for Diploma, Doctoral, and Habilitation theses (German) RIS2XML + support computer program "COMP" type + support patent "PAT" type + support unpublished "UNPB" type + add support for Diploma, Doctoral, and Habilitation theses (German) XML2BIB + output newspaper articles as @ARTICLE as well + output series titles as "series" for book chapter, inproceedings, theses types + add support for Diploma, Doctoral, and Habilitation theses (German) XML2END + support magazine article type + support patent type + support computer program type + add support for Diploma, Doctoral, and Habilitation theses (German) XML2ISI + be more aggressive about outputing the date XML2RIS + support magazine article type + support abstract/summary type + support patent type + support computer program type + support unpublished "UNPB" type + add support for Diploma, Doctoral, and Habilitation theses (German) 3.35 7/30/07 BIB2XML + support translator field COPAC2XML + fix bug where garbage input can lead to infinite loop ENDX2XML + fix bug where multiple style tags caused data to be lost ISI2XML + use authors listed with "AF" instead of "AU" when present as they are a "better" annotated list + fix bug where garbage input can lead to infinite loop (patch thanks to Fred Howell) + add type S for book in series + fix bug where NR number of references was being recognized as journal number RIS2XML + add support for RIS magazine article "MGZN" + add support for RIS abstract "ABST" + add support for reading thesis hint in "user 1" tag "U1" XML2BIB + output article number as page number if page numbers aren't found + support translator field + make preferred form of \text markups have curly brackets XML2END + output article number as page number if page numbers aren't found XML2RIS + output article number as page number if page numbers aren't found + fix recognition of thesis type + output "U1 - Masters thesis" or "U1 - Ph.D. thesis" as a hint for Refbase of the thesis type XML2WORD + output article number as page number if page numbers aren't found 3.34 6/7/07 ENDX2XML + fix bug that prevent dates from being read in 3.33 5/23/07 MED2XML + fix stupid change that caused coredumps 3.32 5/21/07 CHARSET CONVERSION + fix bug where UTF-8/Unicode input is ignored for BibTeX files MODSIN + Recognize both <extent unit="page"> and <extent unit="pages"> NEWSTR + Fix compilation on 64 bit processors BIB2XML + Strip latex \url{} tags from input data XML2BIB + Add recognition of --verbose and --debug XML2END + Add recognition of --verbose and --debug XML2ISI + Add recognition of --verbose and --debug XML2RIS + Add recognition of --verbose and --debug XML2WORD + Add recognition of command line switches 3.31 4/1/07 BIBTEXIN + Fix typo in genre for "incollection" to "monographic" + Remove text markups like \textit{} and \textbf{} + Replace text markups like "\textonesuperior" with appropriate Unicode characters + Have electronic types set MODS resource "software, multimedia" BIBTEXOUT + Modify warning message for "xml2bib: cannot identify type" to tell user that it's defaulting to @Misc so people stop reporting this information to me + Add electronic type recognition and output ENDIN + Have electronic types set MODS genre "electronic" + Add '%S' Series title to Book type + Add recognition of Unicode UTF8 byte order information ENDXMLIN + Ensure that the "label" field ends up in the MODS output as reference ID + Pass through "short-title" information MODSOUT + Fix typo so MARC-authority genre types are "marcgt", not "marc" + Output ACCESSNUM to MODS RISIN + Add thesis type + Add report type RISOUT + Map "collection" and "incollection" from bibtex to "book" and "inbook" + Add thesis type + Add report type ENDOUT + Map "collection" and "incollection" from bibtex to "book" and "inbook" 3.30 3/17/07 XML2WORD + Write first version of the program 3.29 3/12/07 ENDIN + Fix addition of extraneous tag for electronic types; add proper MODS resource tag ENDX2XML + Fix problems parsing in XML files without newlines 3.28 3/10/07 BIBTEXIN + Fix problems parsing files that have non-bibtex lines in them + Add c with a hacek support to latex characters (thanks to George Smith for the information) + Add enspace, emspace, and thinspace support to latex characters (patch from John Spray; thanks!) ENDX2XML + Write first version of the program ISIIN + Add support for DOI tag "DI" NAME MANGLING + Fix bug in handling multibyte Unicode characters XMLIN + Fix bug where single quoted XML attributes were not recognized (Patch due to Jason Lerch; thanks!) XML2ISI + Write first version of the program 3.27 06/22/06 BIBTEXIN + Fix scrambling of title/booktitle for bibtex cross-references involving "incollection" and "inproceeding" types 3.26 06/21/06 MODSIN + Add reading in pubmed/medline/pii identifiers RISOUT + Output pubmed identifiers as UR - PM:###### (Thanks to Mark Runyan) 3.25 06/14/06 BUILD PROCESS + Add NetBSD, FreeBSD, and Cygwin to recognized architectures MODSOUT + Convert patent assignee to the MARC term "patent holder" (modified from patch by Ralf Ahlbrink) + Add role types "organizer of meeting", "inventor", "degree grantor" (modified from patch by Ralf Ahlbrink) NAME MANGLING + Fix possible interactions between pre-defined corporate types and user-defined as-is and corporate types ISI2XML + Add support for "article number" (AR) field that some journals are now using instead of page numbers MED2XML + Fix date parsing for entries that have a "medline format date" rather than a date broken down into XML fields + Fix bug that doesn't output proper end pages if first and last pages are the same length (thanks to Andreas Hartmetz for finding and patching the bug) 3.24 02/21/06 CHARSET CONVERSION + fix bug where requests for UTF-8 encoded output were ignored MED2XML + default input to UTF-8 encoded unicode, as it ought to be + extract a few more items (like pubmed/medline/pii ID's, MeSH headings)...most currently only make it into MODS output XML + fix potential core dump from empty xml attributes values XML2BIB + for better compatibility with Emacs, default the bibtex tags to lower case (based on patch from Stefan Schmitt) + new switch -U, --uppercase to switch to old all uppercase tag behavior 3.23 1/02/06 Changes in this release are thanks to patch and bug report by Jeremy Malcolm. BIB2XML + Add support for volume in @electronic reference type END2XML + Add support for volume in electronic reference type RIS2XML + Add support for TY - ELEC reference type XML2RIS + Add support for TY - ELEC reference type + Fix bug where GENRE, but not NGENRE data was being parsed for reference type 3.22 12/09/05 MODSIN + fix off-by one bug that can cause references to be skipped XML + fix potential coredump on error path in xml_findend() 3.21 11/02/05 CHARSET CONVERSION + add latex version of degree sign, micro sign + numerous fixes to charset handling + add -i,--input-encoding and -o, --output-encoding parameters for the programs xml2bib, xml2end, xml2ris + allow modsin and medin modules to read the character set specified by the xml descriptors + set priority so that the character set has the priority: program defaults < xml file specified < user specified LIBRARY + fix bug where static prototype appears to be illegal and prevents compilation on MacOSX "Tiger" + finally add error reporting messages for library errors BIB2XML + add support for cross referencing 3.20 10/06/05 END2XML + fix type of court reporter NAME PROCESSING + recognize names in the form Author, HQ or HQ Author and split up the initials BUILD PROCESS + switch build to a ./configure; make; make install commands (but do it without autoconf) + add debian package options to Linux and MacOSX as a trial MODSOUT + start fixing position of items like volume, issue, pages for entries now that MODS v3.1 allows part tags at the main level 3.19 09/14/05 BIB2XML + add issuance of monographic to book types: book, inbook, incollection + fix bug where fields protected by braces or quotations would still be subjected to string substitutions + fix bug where string substitutions could be applied multiple times; bibtex has special concatenation with string substitution rules + add latin capital/lowercase c with acute to latex conversion + add some letters with caron (hacek) specifications END2XML + add issuance of monographic to book types: book, edited book, chapter + move publisher to host level in journal article and add to magazine article ISI2XML + add issuance of monographic to book types: book, chapter RIS2XML + add issuance of monographic to book types: book, inbook XML2BIB + The protected latex forms of characters, e.g. {\'A}, are preferred to non-protected, e.g. \'A or \'{A}. So fixup lookup table so the preferred forms are output. XML2RIS + better detection of book types via issuance of monographic SERIALNUMBER + split out common serial number processing code MODSIN + fix bug where unicode character set in was not the default MODSOUT + ensure that ambiguous serial numbers are output + fix bug where -un/-u flags weren't being respected 3.18 07/11/05 BIB2XML + accomodate all entries from the IEEEtrans bibtex style and other requests for missing common fields + to article reference type add key, location, language, note, keywords + to book reference type add key, location, language, note, series, volume, number, lccn, keywords + to techreport reference type add key, location, language, note, institution, number, type, lccn, keywords + to inbook reference type add key, location, language, note, lccn, keywords + to incollection reference type add key, location, language, note, number, chapter, type, lccn + to booklet reference type add key, location, note, series, volume, number organization, language, lccn + to manual reference type add key, location, note, language, organization, lccn, keywords + to inproceedings/incollection type add key, location, note, language, series, number, organization, paper, type, lccn, keywords + to proceedings type add key, location, note, language, series, number, organization, lccn, keywords + to mastersthesis type add key, location, note, language, type, keywords + to phdthesis type add key, location, note, languate, type, keywords + to misc type add key, location, note, language, organization, keywords + add unpublished type + add electronic type + add patent type + add periodical type + add standard type XML2BIB + fix recognition of collection/incollection types + add handling of location information XML2END + output all note fields MODSIN + add physical location to tags read in + fix memory leak in modsin_location() + fix bug in modsin_descriptionr() + keep type="school" information in place entries MODSOUT + handle key field from bibtex 3.17 BIB2XML + add series information to incollection type + add edition input to types + protect URL, DOI, REFNUM fields from being detexified + support URLs in "howpublished" tags + support \url{} in addition to \urllink{} + inbook reference types should use chapter+title, not title+booktitle + incollection reference types should use booktitle+title + fix bug where spaces in string replacements cause the replacements to be misunderstood COPAC2XML + fix but in name mangling and insertion of editors in author fields ISI2XML + fix bug in outputing times cited to note field RIS2XML + add reading user U1-U5 and miscellaneous M1-M3 fields; convert to "notes" so they'll be output at least MODSIN + put in the core of handling physicalDescription tags + fix bug where files with mods ending and starting on the same line were mangled MODSOUT + fix place term output and edition output + output all URL information XML2BIB + add edition output + protect REFNUM fields from being texified + better error messages for misidentified TYPE + recognize Masters and Ph.D. thesis types + inbook reference types should use chapter+title, not title+booktitle + incollection reference types should use booktitle+title + fix recognition of genre magazine as ARTICLE XML2END + fix bug in recognizing the thesis type 3.16 4/10/05 GLOBAL CHANGES + rename progs directory to bin + fix warnings from SunOS compile BIB2XML + add masters thesis type + change Ph.D. thesis and Masters thesis to add non-MARC genres "Ph.D. thesis" and "Masters thesis" to distinguish END2XML + fix bug where endin_readf() can return 0 even if reference is obtained XML2BIB + don't texify special characters in URLs and DOIs 3.15 3/17/05 GLOBAL CHANGES + Convert all programs to use the bibutils library with bibl_read() and bibl_write() with appropriate modes. Massive conversion to a bibutils library. + Add -o or --output-encoding to xml2bib, xml2end, xml2ris + Add -s or --single-refperfile to xml2bib, xml2end, xml2ris + Handle all character conversion issues nicely in the library. Set default to Latin-1 (ISO 8859-1), same as web browsers. + Move around files to lib/, prog/, and test/ directories; fix top level make + Change name of struct newstring to struct newstr for consistency + Change cleanf() to take entire bibliographies and not just references in preparation for cross-referencing handling in bib2xml BIB2XML + Do a nice job of translating latex codes to Unicode + Bump version number to 3.12 COPAC2XML + Bump version number to 1.2 END2XML + Bump version number to 3.13 ISI2XML + Move times cited field to notes + Bump version number to 2.5 MED2XML + Bump version number to 2.3 RIS2XML + Bump version number to 2.11 MODSIN + add URL support to identifier type="uri" XML2BIB + Make sure illegal bibtex isn't outputted (including quotes when brackets aren't requested), and do a nice job of Unicode to latex. + Allow any non-space and non-tab to be output as bibtex key identifiers + Add URL support + Bump version number to 2.6 XML2END + fix output of ISSN/ISBN/URL/etc. + Bump version number to 2.3 XML2RIS + add number/issue output + Bump version number to 2.3 MODSCLEAN + Bump version number to 1.1 3.14 2/09/05 GLOBAL CHANGES FOR THE TOMODS CONVERTERS + The current programs add an underscore and the reference count to the reference id by default. This is changed so that it only occurs when requested using the new -a or --add-refcount flags. + Fixed bug where the reference count wasn't used when outputting individual files for each reference. This is, of course, dependent on the -a or --add-refcount flags. + change --verbose flag to only output warnings + add --debug flag for full output useful in hunting down problems + Major rewrite of the converters: Common framework is in lib/tomods.c Variables and unique function pointers defined by struct convert_rules Must define readf() to read a single reference from a file Must define processf() to convert raw input into tag/data/level in a field using native tags Define cleanf() or set to NULL to define function to clean up data such as LaTeX codes Must define convertf() to convert native tag/data/level elements into those appropriate for MODS XML output. BIB2XML + add URL to list of recognized bibtex entries + bump version number to 3.11 COPAC2XML + bump version number to 1.1 END2XML + fix bug in magazine article that misplaced article title + fix bug that lost track of reference type information + bump version number to 3.12 ISI2XML + parse multiple keywords placed under same tag + bump version number to 2.4 MED2XML + bump version number to 2.2 RIS2XML + bump version number to 2.10 3.13 12/15/04 COPAC2XML + write first version of program ISI2XML + fix bugs in handling multi-author references + bump version number to 2.3 END2XML + clean up some left over references to RIS + fix incrementing in waslast_tag() + bump version number to 3.11 3.12 11/22/04 BIB2XML + add support for FTP = {\urllink{http://online.ref.com}} + add support for TITLE = {\href{http://online.ref.com}Real Title} + add conversion for latex encodings character into unicode; also fixes some processing bugs due to names with a diaresis + add support for reading in digital object identifier (doi) + add unpublished type (and "new" genre type in MODS) + add proceedings type + add misc type + bump version number to 3.10 END2XML + switch order of "Book" and "Book Section" now that the Refer-format handling introduced a bug that caused both to be recognized as Book + bump version number to 3.10 MED2XML + silence compile warnings + pass digital object identifier (doi) information to MODS + bump version number to 2.1 XML2BIB + fix command line parsing + pass digital object identifier (doi) output to bibtex + add unpublished and misc types to output + bump version number to 2.5 XML2END + fix help message + bump version number to 2.2 MAKEFILE + fix typo in "make install" target + repair loss of med2xml in makefile 3.11 9/29/04 BIB2XML + re-write bibtex parser to handle references with missing or empty reference ids + use common title mangling + support table of contents + bump version number to 3.9 END2XML + use common title mangling + bump version number to 3.9 ISI2XML + use common title mangling + bump version number to 2.2 RIS2XML + use common title mangling + bump version number to 2.9 MODSCLEAN + verson 1.0 of the program XML2BIB + fix bug where -fc/--final-comma isn't removed from argument list + merge corporate and non-corporate authors/editors into same bibtex line + support table of contents data + fix distinction between PROCEEDINGS and INPROCEEDINGS data types + bump version number to 2.4 MODSIN + make role="creator" equivalent to role="author" to handle LOC input + support table of contents data MODSOUT + support table of contents data TITLE + merge all copies of title mangling into library XML + properly handle XML comments in files 3.10 9/23/04 BIB2XML + add explicit fflushes to try and help python deadlocks + bump version number to 3.8 END2XML + add explicit fflushes to try and help python deadlocks + fix typo in "Conference Proceedings" type + bump version number to 3.8 ISI2XML + handle processing of names with and without commas properly + bump version number to 2.1 MED2XML + write MODS version of converter + set version to 2.0 RIS2XML + handle processing of names with and without commas properly + bump version number to 2.8 XML2BIB + output author/year combo when REFNUM is not already defined + add keyword, abstract, note to output + bump version number to 2.3 MODSIN + fix merging of placeTerm when both by code and by text are present MODSOUT + add explicit fflushes to try and help python deadlocks NAME + merge all functions for name mangling into library 3.9 09/01/04 BIB2XML + convert "." to ". " in names so that names like G.P. Smith don't lose information + bump version number to 3.7 END2XML + modify parser so that refer-style bibliographies are handled naturally + convert "." to ". " in names so that names like G.P. Smith don't lose information + bump version number to 3.7 ISI2XML + write new MODS version + bump version number to 2.0 RIS2XML + use newstr_trimendingws + convert "." to ". " in names so that names like G.P. Smith don't lose information + bump version number to 2.7 XML2BIB + add corporate authors/editors to output + bump version number to 2.2 XML2RIS + add corporate authors/editors to output + bump version number to 2.2 MODSIN + convert numeric month to name + handle multiple roles per person + prevent unnecessary decents through the XML tree structure + fix core dump in modsin_detailr due to copy/paste bug + fix role processing in corporation names MODSOUT + some code cleanups + if a reference ID cannot be found, first try to output one based on the first author and four-digit year and refnum, eg. Jones2000_123, and then default to a ref#### ID NEWSTR + add newstr_trimendingws XML + fix identification of tags like <title/> that scrambled the XML hierarchy 3.8 07/29/04 XML2BIB + fix bug in command line parsing + fix bug where ending commas are missing + add periods after abbreviated given names + bump version number to 2.1 XML2END + add periods after abbreviated given names + bump version number to 2.1 XML2RIS + add periods after abbreviated given names + bump version number to 2.1 MODSIN + handle pages either as details or extents MODSOUT + fix bug where empty names were output + if given names are abbreviations, e.g. "A. B. Jones", drop periods + write out single pages as details, not extents 3.7 7/27/04 BIB2XML + fix bug where multi-line authors w/o trailing spaces were merged + add publisher and address fields to book and report types + add/fix genre output to many reference types + add support for given name separation for MODSOUT + add issue field to article type + bump version number to 3.6 END2XML + add support for given name separation for MODSOUT + add/fix genre output to many reference types + fix core dump on empty input + bump version number to 3.6 RIS2XML + add support for given name separation for MODSOUT + handle case where last reference in file is missing end tag + add/fix genre/typeOfResource output to many reference types + bump version number to 2.6 XML2BIB + write first MODS version of the program + bump version number to 2.0 XML2RIS + write first MODS version of the program + bump version number to 2.0 FIELDS + add function fields_maxlevel() MODSOUT + add support for separating each part of the given name to a separate namePart construct + write out given names before family name + ensure that both start and end elements are written when page extents are output NEWSTRING + add newstr_toupper(), newstr_prepend() functions 3.6 6/1/04 BIB2XML + bump version number to 3.5 END2XML + bump version number to 3.5 RIS2XML + clean up reference parsing loop as per end2xml from bibutils v 2.16 + fix missing break statement in process_cite that put titles into dates + move abstracts marked by "N2" into the main record, not host + bump version number to 2.5 MODSOUT + move part element of relatedItems to the very last element outputted (needs to be after identifier and .xsd would suggest that it should be the last item) 3.5 BIB2XML + clean up name processing + add corporation recognition for names + add -c, --corporation-file to input corporation names + add genre type periodical to journal articles + bump version number 3.4 END2XML + add genre type periodical to journal articles + add genre type periodical to magazines + add genre type thesis to thesis + fix read_refs() to not require leading %0 as per version 2.16 + use fields_init() + clean up name processing + add -c, --corporation-file to input corporation names + bump version number 2.5 RIS2XML + add genre type periodical to journal articles + clean up name processing + add corporation recognition for names + add -c, --corporation-file to input corporation names + bump version number 2.4 MODSOUT + separate genre output into own function, have it automatically detect genre terms under the "marc authority", make sure genre type is properly unicode formated, allow multiple genres to be output per level of reference + separate typeofResource output into own function, and have it make sure that output matches the legal values, generate error if it doesn't + handle corporation name output 3.4 1/31/04 BIB2XML + add "?" as title/subtitle separator like ":" + bump version to 3.3 END2XML + add "?" as title/subtitle separator like ":" + bump version to 2.4 RIS2XML + do some reference type/tag additions + fix bug where titles weren't being put in output + add "?" as title/subtitle separator like ":" + bump version to 2.3 MODSOUT + fix shorttitle output so that if long version has subtitle, shorttitle is always output...otherwise only output if shorttitle is different than long title 3.3 1/24/04 END2XML + correct typeOfResource "software" to "software, multimedia" + have shorttitles terminate at colons + bump version to 2.3 MODOUTS + allow single and double quotes to be placed directly in output 3.2 1/22/04 BIB2XML + add -un/--unicode-no-bom option for writing unicode w/o adding the byte order mark at the beginning of the file + assign dates in part and in dateIssued by reference type + bump version to 3.2 END2XML + add -un/--unicode-no-bom option for writing unicode w/o adding the byte order mark at the beginning of the file + fix LEVEL_HOST/LEVEL_MAIN mismatches for reference types + assign dates in part and in dateIssued by reference type + bump version to 2.2 RIS2XML + add -un/--unicode-no-bom option for writing unicode w/o adding the byte order mark at the beginning of the file + assign dates in part and in dateIssued by reference type + bump version to 2.2 MODSOUT + convert to proper UTF-8 output + put "ref" in front of all numeric ID cite key for compliance with MODS DTD "rules" + protect mods ID from output illegal characters and IDs that start with non-alphanumerics + fix over-zealousness of fields_find() + distinguish between dates that fall in <part> and those in <dateIsssued> 3.1 1/21/04 BIB2XML + add -d/--drop-key option + bump version to 3.1 END2XML + add -d/--drop-key option + fix loss of year output for newspaper article type + fix moving picture/moving image issue for film type + bump version to 2.1 RIS2XML + add -d/--drop-key option + bump version to 2.1 MODSOUT + fix bug where part is output in main level + add mods ID for cite key, controllable by -d/--drop-key 3.0 1/20/04 BIB2XML + new version 3.0 END2XML + new version 2.0 RIS2XML + new version 2.0 |
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Chris Putnam, Ph.D. cdputnam@scripps.edu The Scripps Research Institute Last Updated: 07/29/04 |